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    Ultraconserved elements-based phylogenomic systematics of the snake superfamily Elapoidea, with the description of a new Afro-Asian family

    Authors
    Das, S.
    Greenbaum, E.
    Meiri, S.
    Bauer, AM.
    Burbink, FT.
    Raxworthy, CJ.
    Weinell, J.
    Brown, RM.
    Brecko, J.
    Pauwels, OSG.
    Rabibisoa, N.
    Raselimanana, AP.
    Merilä, J.
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    Discipline
    Biological sciences
    Subject
    Biological collection and data management
    Audience
    Scientific
    Date
    2023
    Metadata
    Show full item record
    Description
    Highlights >4500 ultraconserved elements loci resolved the phylogeny of the snake superfamily Elapoidea. Anatomical data and phylogeny supported establishment of a new Afro-Asian family of snakes, Micrelapidae. Different phylogeny estimation methods inferred largely congruent topologies. Time calibrated phylogeny supported the hypothesis of a rapid elapoid radiation in the Eocene. Abstract The highly diverse snake superfamily Elapoidea is considered to be a classic example of ancient, rapid radiation. Such radiations are challenging to fully resolve phylogenetically, with the highly diverse Elapoidea a case in point. Previous attempts at inferring a phylogeny of elapoids produced highly incongruent estimates of their evolutionary relationships, often with very low statistical support. We sought to resolve this situation by sequencing over 4,500 ultraconserved element loci from multiple representatives of every elapoid family/subfamily level taxon and inferring their phylogenetic relationships with multiple methods. Concatenation and multispecies coalescent based species trees yielded largely congruent and well-supported topologies. Hypotheses of a hard polytomy were not retained for any deep branches. Our phylogenies recovered Cyclocoridae and Elapidae as diverging early within Elapoidea. The Afro-Malagasy radiation of elapoid snakes, classified as multiple subfamilies of an inclusive Lamprophiidae by some earlier authors, was found to be monophyletic in all analyses. The genus Micrelaps was consistently recovered as sister to Lamprophiidae. We establish a new family, Micrelapidae fam. nov., for Micrelaps and assign Brachyophis to this family based on cranial osteological synapomorphy. We estimate that Elapoidea originated in the early Eocene and rapidly diversified into all the major lineages during this epoch. Ecological opportunities presented by the post-Cretaceous-Paleogene mass extinction event may have promoted the explosive radiation of elapoid snakes.
    Citation
    Das, S.; Greenbaum, E.; Meiri, S.; Bauer, AM.; Burbink, FT.; Raxworthy, CJ.; Weinell, J.; Brown, RM.; Brecko, J.; Pauwels, OSG.; Rabibisoa, N.; Raselimanana, AP.; Merilä, J. (2023). Ultraconserved elements-based phylogenomic systematics of the snake superfamily Elapoidea, with the description of a new Afro-Asian family. , Molecular Phylogenetics and Evolution, Vol. 180, 107700, DOI: https://doi.org/10.1016/j.ympev.2022.107700.
    Identifiers
    uri: https://orfeo.belnet.be/handle/internal/13185
    doi: https://doi.org/10.1016/j.ympev.2022.107700
    url: https://www.sciencedirect.com/science/article/pii/S105579032200313X?via%3Dihub
    Type
    Article
    Peer-Review
    Yes
    Language
    eng
    Links
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